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Microsoft SharePoint: Strengths, Limitations, Hidden Pitfalls, and Alternatives

Auteur n°3 – Benjamin

By Benjamin Massa
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Summary – In the face of the need to centralize documents and processes while controlling costs and innovation capacity, decision-makers must assess robustness, integration and long-term risks.
SharePoint delivers compliant document management with versioning, granular permissions and native Microsoft 365 sync, but its complex setup, expensive licenses and third-party add-ons, functional debt and often low adoption weigh on TCO.
Solution: targeted audit → compare open-source alternatives (Nextcloud, Alfresco, Elastic) or develop custom to align the tool with your needs, reduce recurring costs and avoid vendor lock-in.

In the landscape of collaborative solutions, Microsoft SharePoint is often presented as the universal tool to centralize documents and business processes. Yet its effectiveness is largely determined by the nature and complexity of real-world needs.

This article offers an objective analysis to help IT and business decision-makers understand where SharePoint excels, where it stalls, and which pitfalls emerge after prolonged use. We also present open source alternatives and the benefits of custom development to ensure cost control, scalability, and freedom from a single vendor. You’ll gain a clear perspective to choose the document management platform best suited to your organization.

Real Advantages of SharePoint for Document Collaboration

SharePoint provides centralized document management with robust version control and built-in compliance. Its native integration with Microsoft 365 makes collaborative work seamless for organizations already invested in the Microsoft ecosystem.

Document Management and Compliance

SharePoint offers a document management engine that tracks every change, automatically archives versions, and defines retention rules according to regulatory requirements. This traceability is crucial for companies subject to ISO 27001 or financial audits.

Structured metadata enables classification of documents by project, department, or content type, and generates compliance reports via PowerShell or the admin center. These features largely eliminate the need for third-party extensions to meet legal obligations.

A financial services company standardized its document retention policy on SharePoint to satisfy regulatory demands. After six months, the team saw a 40% reduction in time spent on internal audits, demonstrating SharePoint’s ability to streamline compliance processes.

Native Microsoft 365 Integration

SharePoint libraries sync automatically with Teams, OneDrive, and Office. Users can co-edit a Word document in real time, add comments, and assign tasks without switching interfaces. This convergence reduces friction and encourages adoption among teams familiar with Microsoft 365.

Outlook allows emails to be saved directly to a SharePoint library, with a unified search index covering mail, Teams files, and intranet sites. This technical consistency enhances usability and limits the need for third-party search tools.

Flexible Sharing and Permissions

SharePoint offers a granular permissions system, allowing rights to be configured at the site, library, folder, or even document level. You can delegate management to business owners without exposing the entire repository.

External sharing relies on one-time links or password-protected links with scheduled expiration. These options enable collaboration with partners or subsidiaries while maintaining strict control over sensitive information.

In an industrial SME, engineers worked with external suppliers on technical drawings. Thanks to SharePoint’s secure links, they reduced repetitive access requests by 25%, showing that the solution can simplify inter-company collaboration when properly configured.

Structural Constraints and Hidden Costs of SharePoint

SharePoint’s architecture can become complex to configure and maintain, increasing IT dependency. License fees and third-party extension costs quickly add to the total cost of ownership (TCO), often underestimated during the decision phase.

Configuration Complexity and Maintenance

Setting up a multi-site architecture, defining content types, and creating Power Automate flows require specialized skills. Without an internal documentation repository and formal governance, operational upkeep becomes a constant challenge.

Each update to SharePoint Online or SharePoint Server may require extensive testing to validate customization compatibility. This phase prolongs deployment cycles and introduces regression risks.

Indirect Costs and Additional Licenses

Beyond Microsoft 365 subscriptions, organizations often turn to third-party solutions to fill missing functionality: advanced metadata management, complex workflows, or richer intranet interfaces. These costs stack on top of the base price and are not always anticipated.

The services of a specialized integrator quickly become indispensable to deploy complementary solutions or address functional gaps. A SharePoint consultant’s hourly rate can reach 150 CHF/hour, which heavily impacts the overall budget.

A financial institution invested in a third-party UI module, increasing its TCO by 30% over two years, confirming the necessity to evaluate all costs before committing.

Vendor Lock-in and Structural Rigidity

SharePoint enforces architectural choices that can be rigid: maximum library size, metadata column limits, storage quotas, and restrictive server configurations. Exceeding these thresholds requires refactoring or partial migration.

Deep customization via SPFx or the Power Platform can become fragile with each publisher update, leading to technical debt when scripts and web parts become incompatible.

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Pitfalls and Drift After 12–24 Months of Use

Over time, SharePoint can turn into a behemoth, generating functional debt and stifling innovation. Internal adoption often wanes, resulting in knowledge loss and a static intranet beyond its original scope.

Behemoth and Functional Debt

An accumulation of workflows and Power Automate scripts, combined with web parts and heavy customizations, quickly creates an ecosystem that’s hard to document. Each update carries regression risk, and any partial overhaul can become an endless project.

Functional debt mounts when quick fixes pile up without a strategic plan. Teams ultimately bypass official tools, resorting to Excel files or traditional folder shares, undermining the initial centralization goal.

Low Adoption and Knowledge Loss

Although improving, SharePoint’s interface is still seen as austere by some business users. Limited training, a shortage of internal champions, and incomplete documentation lead to reluctance in daily use.

When a team abandons the portal, documents accumulate in untracked storage, and project knowledge disperses. Reactivating an inactive SharePoint site then becomes a challenge, as processes and permissions have fallen into disuse.

A Swiss healthcare SME saw half its users abandon SharePoint in favor of alternative solutions after one year. This decline highlighted the need for ongoing change management to maintain engagement.

Static Intranet and Document Management Misuse

Rather than evolving, some SharePoint intranets remain static, limited to a document library and a few home pages. The site then loses its added value, as it’s no longer aligned with business processes and evolving needs.

Organizations may also misuse SharePoint as a pseudo-ERP, creating lists to manage inventory, quotes, or HR — use cases for which the platform was not designed. These workarounds result in poorly optimized interfaces and nonstop maintenance.

Open Source Alternatives and Custom Development

Open source solutions like Nextcloud, Alfresco, or OnlyOffice offer similar document management features without vendor lock-in. Custom development lets you align the platform precisely with your business processes and control its long-term evolution.

Nextcloud, Alfresco, and OnlyOffice for Modular DMS

Nextcloud provides an ecosystem for storage, sharing, and document co-editing, with mobile apps and desktop sync. Its open source model frees you from licensing costs and allows deep customization of workflows.

Alfresco Community Edition delivers a rich document management engine, lifecycle rules, and an archiving system. Coupled with OnlyOffice for co-editing, this stack rivals SharePoint while ensuring full control over your data.

A Geneva institution migrated its document archives from SharePoint to Alfresco Community Edition, cutting license costs by 45%. This example highlights the appeal of an open source foundation for organizations seeking both scalability and cost control.

Elastic and Business Search Solutions

For advanced search and document analytics, Elastic offers a powerful engine capable of massive indexing, semantic queries, and integration with Kibana for dynamic dashboards.

Complementing an open source DMS, Elastic enables the creation of a tailor-made document directory with full-text search, custom filters, and automated report generation.

Custom Platforms and Avoiding Vendor Lock-in

Building a custom document platform lets you implement exactly your internal processes: approvals, workflows, dashboards, and ERP or CRM integrations, without vendor-imposed constraints.

By choosing an open source technology stack (Node.js, Spring Boot, PostgreSQL), you retain the freedom to host wherever you wish and optimize code to meet performance and security requirements.

A major logistics group entrusted its document portal overhaul to a ground-up custom development. The result: a 60% reduction in request processing time and complete independence from a third-party provider. This case demonstrates the value of a thoughtful bespoke solution.

Toward a Flexible, Controlled Document Platform

SharePoint remains a robust solution for document collaboration within a Microsoft ecosystem but quickly reveals its limitations when business processes become mission-critical over the medium and long term. Hidden costs, functional debt, and structural dependency can impede innovation and inflate maintenance.

In contrast, leveraging open source solutions or custom development ensures precise alignment with your needs, cost control over time, and freedom to evolve. Modularity, scalability, and data ownership then become genuine competitive levers.

Our experts are available to review your current platform, assess SharePoint-related risks, and guide you to a document management solution tailored to your business challenges. Whether migrating to open source alternatives or implementing custom development, we help you secure your transformation.

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By Benjamin

Digital expert

PUBLISHED BY

Benjamin Massa

Benjamin is an senior strategy consultant with 360° skills and a strong mastery of the digital markets across various industries. He advises our clients on strategic and operational matters and elaborates powerful tailor made solutions allowing enterprises and organizations to achieve their goals. Building the digital leaders of tomorrow is his day-to-day job.

FAQ

Frequently Asked Questions About SharePoint Document Management

What are the key criteria for choosing between SharePoint and an open source document management system (DMS)?

Selecting a document management platform depends on several factors: the existing IT ecosystem, workflow complexity, total cost of ownership (licenses, integrations, support), and risk of vendor lock-in. SharePoint integrates seamlessly with Microsoft 365 but can incur hidden costs. An open source DMS (Nextcloud, Alfresco) offers customization flexibility and cost control but requires in-house expertise or an experienced partner to deploy and maintain the infrastructure.

How do you assess the real TCO of SharePoint beyond Microsoft 365 licenses?

Beyond the license fees included in Microsoft 365, the TCO encompasses integration, third-party add-ons, maintenance, and training. You should account for investment in skills (SharePoint consultant, administrator), custom workflow development costs, and possible add-ons for advanced metadata management or the intranet interface. Also consider regular updates, compatibility testing, and user support. An audit of existing assets and actual needs helps quantify these items.

What are the steps to successfully migrate data from SharePoint to Alfresco or Nextcloud?

A successful migration follows several phases: content and metadata audit, definition of mapping between schemas and templates, design of a migration plan with schedule and responsibilities, testing in a pilot environment, issue resolution, user training, and gradual production rollout. Expert technical guidance ensures consistent permissions and workflows. Finally, post-migration follow-up (support, documentation) helps adjust processes and validate the quality of imported data.

How can you prevent functional debt and over-engineering in a SharePoint intranet over the long term?

To prevent functional debt, establish document and technical governance from the start: define content templates, limit non-standard customizations, and prioritize critical business processes. Document each Power Automate workflow and web part deployed, and schedule regular reviews to archive or refactor obsolete elements. Involve business stakeholders to approve changes and maintain a catalog of reusable components to avoid the proliferation of ad hoc solutions.

Which KPIs should you track to measure the adoption and effectiveness of a document management platform?

Key indicators include active site usage rate, number of documents created and modified, average search time, volume of support tickets related to the platform, and frequency of collaboration (co-authoring, comments). You can also measure reduction in compliance time (audits, retention), adherence to validation deadlines, and user satisfaction levels via regular surveys.

When should you opt for custom development instead of deploying SharePoint?

Custom development is necessary when your business processes don't fit within standard frameworks or when the volume and complexity of workflows exceed SharePoint's customization capabilities without incurring excessive technical debt. If you require full architecture control, want to avoid vendor lock-in, and need scalability without vendor constraints, a custom solution (Node.js, Spring Boot, PostgreSQL) ensures exact alignment with your needs, hosting freedom, and complete data security control.

How can you ensure team upskilling and adoption of SharePoint?

Anticipate change management with a targeted training plan (hands-on workshops, e-learning) and identify business “champions” to share best practices. Create simple internal documentation (quick-start guides, FAQ) and set up dedicated support (helpdesk, Q&A sessions). Conduct regular feedback sessions to adapt usage and highlight productivity gains, which strengthens engagement and fosters a collaborative SharePoint culture.

What are the functional limitations of SharePoint for advanced metadata management?

SharePoint has limits on the number of columns, depth of hierarchies, and list volumes before performance thresholds are reached. Handling complex metadata (hierarchical taxonomies, dynamic rules) may require add-ons or SPFx development, with the risk of breakage during updates. Open source alternatives often offer greater modularity to model sophisticated document schemas without such restrictive technical ceilings.

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